Package: DisHet 1.0.0

DisHet: Estimate the Gene Expression Levels and Component Proportions of the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor Samples

Model cell type heterogeneity of bulk renal cell carcinoma. The observed gene expression in bulk tumor sample is modeled by a log-normal distribution with the location parameter structured as a linear combination of the component-specific gene expressions.

Authors:Tao Wang

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NEWS

# Install 'DisHet' in R:
install.packages('DisHet', repos = c('https://wtwt5237.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • eTME_signatures - Empirically-defined Immune Signature Genes in RCC Bulk Tumor

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2 exports 0.71 score 2 dependencies 2 mentions 3 scripts 194 downloads

Last updated 6 years agofrom:c0b198275a. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 04 2024
R-4.5-winOKSep 04 2024
R-4.5-linuxOKSep 04 2024
R-4.4-winOKSep 04 2024
R-4.4-macOKSep 04 2024
R-4.3-winOKSep 04 2024
R-4.3-macOKSep 04 2024

Exports:DisHetStromaExp

Dependencies:gtoolsmatrixStats